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While running the protected_areas\pa_processor.py, if bounding box of the input raster covers more than one country, all outputs are being saved into one of the output geojson files. Geojsons transformed into geopackages are the same - one layer contains all features, another geojson - no features.
The log is the following:
Processing FRA_protected_areas...
Skipping FRA_protected_areas because it is empty.
Processing ESP_protected_areas...
Protected areas are filtered according to year stamps of LULC and PAs' establishment year: 2017
Filtered protected areas are written to: /src/data/output/protected_areas/pa_rasters/pas_2017.gpkg
This issue is not critical as all features are being still exported and used further, but needs to be fixed.