From 3d4bffa12860549e7fc20bb7061c216b6a1bedcb Mon Sep 17 00:00:00 2001 From: Adam English Date: Fri, 5 Jan 2024 22:47:52 -0500 Subject: [PATCH] adding tests --- .../answer_key/phab/phab_result_poa.vcf.gz | Bin 0 -> 4256 bytes repo_utils/sub_tests/phab.sh | 11 +++++++++++ truvari/phab.py | 11 ++++++++--- 3 files changed, 19 insertions(+), 3 deletions(-) create mode 100644 repo_utils/answer_key/phab/phab_result_poa.vcf.gz diff --git a/repo_utils/answer_key/phab/phab_result_poa.vcf.gz b/repo_utils/answer_key/phab/phab_result_poa.vcf.gz new file mode 100644 index 0000000000000000000000000000000000000000..b38c3a611a2654b3372621976162de0a1f7e1f1c GIT binary patch literal 4256 zcmV;R5MS>fiwFb&00000{{{d;LjnMt4DFp;kKMKrfS;9L5yY=XOj7qETR=FDPYgJ= zYpX%~m^vG0fz8_3-4@8duMVjTuOcOp5~XF`33VijB8MM`qoJgI_U!kY+w0%I-2eIO zfBWw5mvi2I__?a_Ip_NM+yDOgpX>W8_`Lq>>-E*g$NQVR&ulU0>$@+H z%|U$fr!RMpH=pszpZ>Uq&u_2qK0p3(g_5F7vjibA4;u0ySjH(T#XNDB2bKjY(=?Uj zNrpTC!KBF~=1KcJ1x(`t$;!$4JUJ*pTIP~Gd7mdOa$dTnP( z^FNqLdIa^#PO==7Wg+Q()a$zG4p=0aL_z-=D9S(rnh_%A`FCGTj!>S!OP145AKv{O zy?^&Hdi^r`@Z+nfdQ(UL_-FMdBEvm;{r1(nhz#TCr!xSc%y0^Gh*O0Bo5Tf9Q}SPk z+B9y{1g9Ay=VUqApU1FGQJZ%ANjXg&aav^f{Du$w8$yt^X-QI2K7=SHX^zi_C?UU5 zifh;4+@={RCnfc51|BJ|D9Qd3k$h!}NSfo{s41DGX-d)p;IysB#Zt5>$=?8m)1=5q zTH^9hV{=HFx4#RLuNi41jY+x97$zxc7iv16q@=tUkn6@EOG#Sd<8jkqoW?|7%|M7r z+Md_eBTgatohE>!IVmqINd8N|ysa9oq7tV?qlYFf(m26s+4KWWV|=_sanYvj@21>K znx!Od=x)+Rjkvr>@IXWX2yWeiUesdYTQ3gQteRPUW_33n~&ZoMn>bkDFfBZ&8jDz!FzpMG@vbu;&2lWJAt<#78+82>2V+`?u`sDRoSq`+b0Jrb9z=h^cv4X5EXPj8 zCR7LE;~4$S`@`yE7Wr7_g*raC5mG+j1dW`ZmBa(2_RiFL+-zTmNlc*&Q>Um}c9Sa4 zN5>ilr_LlkK|6|&IxZiOkaI5S_=I?jj&;Bnblii#?ofBg)EiQ5lR31IX{RJUk>G(` z*FotkDm}YsItn^pQ|CDbJs6kub-u}Y3@*ytO+VdQ*6K{L~2Slv4Uc&K$|DF5F zpT&I@y@$OFK6qXZoy@cZu?n3LWX|kP=-MZMfET7@348MvT6E{hu5Yp=Y@=<8<7;x{ zlrmo!+eW-B$Bp&0JnfaS?ec7G>QZ$-w zRIZ3p&8fV9O7~`Dw@QbXb(JcrLTFHOT~}c$cv*O;RiQz1&<8!zIx+)Y-GA&c$n1xV zj)e9xbrJV1lVy%HOfcx01-4*ZtO%oXE$Dg?4ThaNM%6LZ9U~mQz9*m;twmq>>}@dV zV!KC7dWoHv;J&ORyxRNQ2%Y}t$y)6mH&*K5vX%Z3a_Bw|`P|wXaRA6(@$kpiptQ5_ zx~C}QWy|$0bLk+Z3tsQ6%gMTiqE1*>b;!rMlaSE~jC|C4aAzjUGIu71J?w$?^;l10 zqhL&6-6reF`2Er{(pk^l9qD3_fWDR(K-ipgv#?_z-74wjSTtri=mRviLFXZ~4La-c z^4Eq!8_hvaW0R<3;M^wXX%;NH0(5s4JHW^A z(`4C^mwQCE)-d*-X#dQyTH8^VqY>3SXTeBy3qO@t}XM_Y5nu{AL`8ZseZoHj~mF8 z&t8LXlluUJ}cp~gaw(2_AN3D8} zKLS@PzhksSj_ktBY88Tyq{ZLWPpi6NH2{3hFy%({aa!&>b z=RirlS>4b zD%?Eiep+n^^|3`zdhVBbpz?)Z)pKU-ew}vpo;8SA!^eB2e4EtQVMD8Ih_ySP z(v@M4)anmD2QlqzTSG)LLbh(S-?GT|bsbW4(@1y-MYVKe{~?sP{Zi!$fBDa*xVfQo zF0Im&?lD?yc-AyB^R%?3SgISR`Fce2ZVZjAY&P8Io1qb%q9ulg);#@P+~9huT~G0e z0G<{T*OStGc#+&{+s0!R32dj<;j4ZjD&bx_?I*OQmn2wwErDpD(uQCG@RCUYsL&J4`%XLu)K1#!XRfRhPEOQ6!8G7H1whd_5Y+ph*~K-N<+ zwU=Jl)isel9JFf@=_M(FNDqk=w)g{Un$hvud;A4W(}A(XLs;%z@NE#@m)IQIK6i?`7d9pyS$l)IFecCc(2p$z*Tl5~B+#MV3K<+rX7VNJ0 z0jrK0^=G|6pPGHZivPUUln+?VcTmSZV8!M$`G6H$Z^)HNw_o^xRiJkaS*w=!h=JN* zdADVkMs)?3Hy|AForA9&-gVhMzO3L(@0{IP@UHFkZjI3nFr0h+4e_P2R5R%f@E%tT z2F?EgYL~Qf0RI30ABzYC000000RIL6LPG)o<^%0nNs^;55Iob58LP(b#y%>1-~;@i zFMaO+9|p`K)ux5TU=QJ_Frbo9rBbPq`1t<$g`&J%ia&)dY;Eh>cEA3rYOefy>@xf@ z7fXHF1#P0X_pS-&SWyr9hb~ZYSGV?i#U1Zf>y6jEwFHv}srFaZg*lnSA_mjyeW<+5 zVP+~f7oe%&IEAKf%TCxq9~QI!m7VV)qEo3T)eE-;r^y1CWy(9AOVbx4>0X6$aTaW8 z2Ll5PBmvo{$m9-5vbAkX(u12%vX{(22X1~fNY_Pe9q7;mv?nt==)*!bfL;bcH{{=$ zA%14`GktmY%#7v3z3=Pl8dMLn89(>ilT25CAlHDd!7IZt$?tZFFUQ9B_pqX%HyR@= z45+c_u>EIwgEgdFb&&>yn?SWxEzzoxxW&Nu+ys!RjAU0z~* zzYtR;=4mqm`(Wvi+70zPPh$L7fVGoImI3rzmtY^DZvc8dFNxuGD1dYUlNTuL>nAaM zG1LcL({;MG=+(LH(neUS8R0z!Y`iMAH_p zI5BDVBF*-c>_sMhD0_)1&QjUS2s%C144g~iD}RdkQV^0QT^q41#nB7PQb=m18rSPI zS<*%%CHH1iWb$aC$wiew51Gzj4GJCtRqk|Xmsv&p`;>GbL?NoYystfN<>4BK42?@Q zei-1-{0|+=?dkHsT+i~~nHSRpqXW0fnNjNckRG`_RYK2lGUT-w!ZO_v_4sUvA5o6RtnLcox-bVE!KZaxS^P@K*ASZ}TzQvOm7} zQIba5KPkdT4SL(ss7fQi+n~DvDLxH(^t?m;c5bu%dolAXP>#;d*&9E@R^J=nKL56u zR}JiMxRCB{a0bxXSD+OJcx4N{hfDs3)?