Updated YAML

Author: DanielaBreitman

ENV.yml

@@ -1,211 +1,162 @@
-name: py21cmEMU_dev
+name: 21cmEMU
 channels:
-  - anaconda
-  - conda-forge
   - defaults
 dependencies:
-  - _libgcc_mutex=0.1=main
-  - _openmp_mutex=5.1=1_gnu
-  - argon2-cffi=21.3.0=pyhd8ed1ab_0
-  - argon2-cffi-bindings=21.2.0=py39hb9d737c_2
-  - asttokens=2.2.1=pyhd8ed1ab_0
-  - attrs=23.1.0=pyh71513ae_1
-  - backcall=0.2.0=pyh9f0ad1d_0
-  - backports=1.0=pyhd8ed1ab_3
-  - backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
-  - beautifulsoup4=4.12.2=pyha770c72_0
-  - blas=1.0=mkl
-  - bleach=6.0.0=pyhd8ed1ab_0
-  - bzip2=1.0.8=h7b6447c_0
-  - c-ares=1.18.1=h7f8727e_0
-  - ca-certificates=2023.01.10=h06a4308_0
-  - cffi=1.15.0=py39h4bc2ebd_0
-  - cudatoolkit=11.8.0=h6a678d5_0
-  - curl=7.87.0=h5eee18b_0
-  - dbus=1.13.18=hb2f20db_0
-  - decorator=5.1.1=pyhd8ed1ab_0
-  - defusedxml=0.7.1=pyhd8ed1ab_0
-  - entrypoints=0.4=pyhd8ed1ab_0
-  - executing=1.2.0=pyhd8ed1ab_0
-  - expat=2.2.10=h9c3ff4c_0
-  - flit-core=3.9.0=pyhd8ed1ab_0
-  - fontconfig=2.14.1=hef1e5e3_0
-  - freetype=2.10.4=h0708190_1
-  - gdbm=1.18=hd4cb3f1_4
-  - gettext=0.21.0=hf68c758_0
-  - giflib=5.2.1=h36c2ea0_2
-  - git=2.34.1=pl5262hc120c5b_0
-  - glib=2.69.1=he621ea3_2
-  - gst-plugins-base=1.14.1=h6a678d5_1
-  - gstreamer=1.14.1=h5eee18b_1
-  - icu=58.2=hf484d3e_1000
-  - importlib-metadata=6.6.0=pyha770c72_0
-  - importlib_resources=5.12.0=pyhd8ed1ab_0
-  - intel-openmp=2021.4.0=h06a4308_3561
-  - ipykernel=5.5.5=py39hef51801_0
-  - ipython=8.13.2=pyh41d4057_0
-  - ipython_genutils=0.2.0=py_1
-  - ipywidgets=8.0.6=pyhd8ed1ab_0
-  - jedi=0.18.2=pyhd8ed1ab_0
-  - jinja2=3.1.2=pyhd8ed1ab_1
-  - jpeg=9e=h166bdaf_1
-  - jsonschema=4.17.3=pyhd8ed1ab_0
-  - jupyter=1.0.0=py39hf3d152e_8
-  - jupyter_client=7.0.6=pyhd8ed1ab_0
-  - jupyter_console=6.4.3=pyhd3eb1b0_0
-  - jupyter_core=5.3.0=py39hf3d152e_0
-  - jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
-  - jupyterlab_widgets=3.0.7=pyhd8ed1ab_1
-  - keyutils=1.6.1=h166bdaf_0
-  - krb5=1.19.3=h3790be6_0
-  - ld_impl_linux-64=2.38=h1181459_1
-  - lerc=3.0=h295c915_0
-  - libcurl=7.87.0=h91b91d3_0
-  - libdeflate=1.17=h5eee18b_0
-  - libedit=3.1.20191231=he28a2e2_2
-  - libev=4.33=h7f8727e_1
-  - libevent=2.1.12=h8f2d780_0
-  - libffi=3.4.4=h6a678d5_0
-  - libgcc-ng=11.2.0=h1234567_1
-  - libgomp=11.2.0=h1234567_1
-  - libllvm10=10.0.1=he513fc3_3
-  - libnghttp2=1.46.0=hce63b2e_0
-  - libpng=1.6.39=h5eee18b_0
-  - libpq=12.9=h16c4e8d_3
-  - libsodium=1.0.18=h36c2ea0_1
-  - libssh2=1.10.0=h8f2d780_0
-  - libstdcxx-ng=11.2.0=h1234567_1
-  - libtiff=4.5.0=h6a678d5_2
-  - libwebp=1.2.4=h11a3e52_1
-  - libwebp-base=1.2.4=h5eee18b_1
-  - libxcb=1.15=h7f8727e_0
-  - libxkbcommon=1.0.1=hfa300c1_0
-  - libxml2=2.9.14=h74e7548_0
-  - libxslt=1.1.35=h4e12654_0
-  - lz4-c=1.9.3=h9c3ff4c_1
-  - matplotlib-inline=0.1.6=pyhd8ed1ab_0
-  - mistune=2.0.5=pyhd8ed1ab_0
-  - mkl=2021.4.0=h06a4308_640
-  - mkl-service=2.4.0=py39h7f8727e_0
-  - mkl_fft=1.3.1=py39hd3c417c_0
-  - mkl_random=1.2.2=py39h51133e4_0
-  - nbclient=0.8.0=pyhd8ed1ab_0
-  - nbconvert=7.4.0=pyhd8ed1ab_0
-  - nbconvert-core=7.4.0=pyhd8ed1ab_0
-  - nbconvert-pandoc=7.4.0=pyhd8ed1ab_0
-  - nbformat=5.8.0=pyhd8ed1ab_0
-  - ncurses=6.4=h6a678d5_0
-  - nest-asyncio=1.5.6=pyhd8ed1ab_0
-  - notebook=6.3.0=py39hf3d152e_0
-  - nspr=4.33=h295c915_0
-  - nss=3.74=h0370c37_0
-  - numpy=1.23.5=py39h14f4228_0
-  - numpy-base=1.23.5=py39h31eccc5_0
-  - openssl=1.1.1t=h7f8727e_0
-  - packaging=23.1=pyhd8ed1ab_0
-  - pandoc=2.19.2=ha770c72_0
-  - pandocfilters=1.5.0=pyhd8ed1ab_0
-  - parso=0.8.3=pyhd8ed1ab_0
-  - pcre=8.45=h9c3ff4c_0
-  - pcre2=10.37=he7ceb23_1
-  - perl=5.34.0=h5eee18b_2
-  - pexpect=4.8.0=pyh1a96a4e_2
-  - pickleshare=0.7.5=py_1003
-  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
-  - platformdirs=3.5.1=pyhd8ed1ab_0
-  - ply=3.11=py_1
-  - prometheus_client=0.16.0=pyhd8ed1ab_0
-  - prompt-toolkit=3.0.38=pyha770c72_0
-  - prompt_toolkit=3.0.38=hd8ed1ab_0
-  - ptyprocess=0.7.0=pyhd3deb0d_0
-  - pure_eval=0.2.2=pyhd8ed1ab_0
-  - pycparser=2.21=pyhd8ed1ab_0
-  - pygments=2.15.1=pyhd8ed1ab_0
-  - pyqt=5.15.7=py39h6a678d5_1
-  - pyqt5-sip=12.11.0=py39h6a678d5_1
-  - pyrsistent=0.18.0=py39heee7806_0
-  - python=3.9.16=h7a1cb2a_2
-  - python-dateutil=2.8.2=pyhd8ed1ab_0
-  - python-fastjsonschema=2.17.1=pyhd8ed1ab_0
-  - python_abi=3.9=2_cp39
-  - pyzmq=19.0.2=py39hb69f2a1_2
-  - qt-main=5.15.2=h327a75a_7
-  - qt-webengine=5.15.9=hd2b0992_4
-  - qtconsole=5.4.3=pyhd8ed1ab_0
-  - qtconsole-base=5.4.3=pyha770c72_0
-  - qtpy=2.3.1=pyhd8ed1ab_0
-  - qtwebkit=5.212=h4eab89a_4
-  - readline=8.2=h5eee18b_0
-  - send2trash=1.8.2=pyh41d4057_0
-  - setuptools=66.0.0=py39h06a4308_0
-  - sip=6.6.2=py39h6a678d5_0
-  - six=1.16.0=pyh6c4a22f_0
-  - soupsieve=2.3.2.post1=pyhd8ed1ab_0
-  - sqlite=3.41.2=h5eee18b_0
-  - stack_data=0.6.2=pyhd8ed1ab_0
-  - terminado=0.17.1=pyh41d4057_0
-  - tinycss2=1.2.1=pyhd8ed1ab_0
-  - tk=8.6.12=h1ccaba5_0
-  - toml=0.10.2=pyhd8ed1ab_0
-  - tornado=6.1=py39hb9d737c_3
-  - traitlets=5.9.0=pyhd8ed1ab_0
-  - typing-extensions=4.6.1=hd8ed1ab_0
-  - typing_extensions=4.6.1=pyha770c72_0
-  - tzdata=2023c=h04d1e81_0
-  - wcwidth=0.2.6=pyhd8ed1ab_0
-  - webencodings=0.5.1=py_1
-  - wheel=0.38.4=py39h06a4308_0
-  - widgetsnbextension=4.0.7=pyhd8ed1ab_0
-  - xz=5.4.2=h5eee18b_0
-  - zeromq=4.3.4=h9c3ff4c_1
-  - zipp=3.15.0=pyhd8ed1ab_0
-  - zlib=1.2.13=h5eee18b_0
-  - zstd=1.5.2=ha4553b6_0
-  - pip:
-      - absl-py==1.4.0
-      - appdirs==1.4.4
-      - astunparse==1.6.3
-      - cachetools==5.3.0
-      - certifi==2023.5.7
-      - charset-normalizer==3.1.0
-      - click==8.1.3
-      - flatbuffers==23.5.9
-      - gast==0.4.0
-      - gitdb==4.0.10
-      - gitpython==3.1.31
-      - google-auth==2.18.1
-      - google-auth-oauthlib==1.0.0
-      - google-pasta==0.2.0
-      - grpcio==1.54.2
-      - h5py==3.8.0
-      - idna==3.4
-      - jax==0.4.10
-      - keras==2.12.0
-      - libclang==16.0.0
-      - markdown==3.4.3
-      - markupsafe==2.1.2
-      - ml-dtypes==0.1.0
-      - nvidia-cublas-cu11==11.11.3.6
-      - nvidia-cuda-runtime-cu12==12.1.105
-      - nvidia-cudnn-cu11==8.6.0.163
-      - oauthlib==3.2.2
-      - opt-einsum==3.3.0
-      - pip==23.1.2
-      - protobuf==4.23.1
-      - py21cmemu==1.0.8
-      - pyasn1==0.5.0
-      - pyasn1-modules==0.3.0
-      - requests==2.31.0
-      - requests-oauthlib==1.3.1
-      - rsa==4.9
-      - scipy==1.10.1
-      - smmap==5.0.0
-      - tensorboard==2.12.3
-      - tensorboard-data-server==0.7.0
-      - tensorflow==2.12.0
-      - tensorflow-estimator==2.12.0
-      - tensorflow-io-gcs-filesystem==0.32.0
-      - termcolor==2.3.0
-      - urllib3==1.26.16
-      - werkzeug==2.3.4
-      - wrapt==1.14.1
+  - pyrsistent==0.18.0=py39heee7806_0
+  - libdeflate==1.17=h5eee18b_0
+  - python-dateutil==2.8.2=pyhd8ed1ab_0
+  - tk==8.6.12=h1ccaba5_0
+  - gettext==0.21.0=hf68c758_0
+  - qtpy==2.3.1=pyhd8ed1ab_0
+  - libevent==2.1.12=h8f2d780_0
+  - libffi==3.4.4=h6a678d5_0
+  - libxkbcommon==1.0.1=hfa300c1_0
+  - qtwebkit==5.212=h4eab89a_4
+  - libwebp==1.2.4=h11a3e52_1
+  - cffi==1.15.0=py39h4bc2ebd_0
+  - pycparser==2.21=pyhd8ed1ab_0
+  - jupyter_core==5.3.0=py39hf3d152e_0
+  - qt-main==5.15.2=h327a75a_7
+  - mkl_fft==1.3.1=py39hd3c417c_0
+  - ncurses==6.4=h6a678d5_0
+  - fontconfig==2.14.1=hef1e5e3_0
+  - glib==2.69.1=he621ea3_2
+  - pandocfilters==1.5.0=pyhd8ed1ab_0
+  - importlib-metadata==6.6.0=pyha770c72_0
+  - xz==5.4.2=h5eee18b_0
+  - prometheus_client==0.16.0=pyhd8ed1ab_0
+  - qtconsole-base==5.4.3=pyha770c72_0
+  - asttokens==2.2.1=pyhd8ed1ab_0
+  - tinycss2==1.2.1=pyhd8ed1ab_0
+  - prompt-toolkit==3.0.38=pyha770c72_0
+  - send2trash==1.8.2=pyh41d4057_0
+  - wheel==0.38.4=py39h06a4308_0
+  - libtiff==4.5.0=h6a678d5_2
+  - mkl==2021.4.0=h06a4308_640
+  - jinja2==3.1.2=pyhd8ed1ab_1
+  - libsodium==1.0.18=h36c2ea0_1
+  - readline==8.2=h5eee18b_0
+  - nest-asyncio==1.5.6=pyhd8ed1ab_0
+  - toml==0.10.2=pyhd8ed1ab_0
+  - ld_impl_linux-64==2.38=h1181459_1
+  - flit-core==3.9.0=pyhd8ed1ab_0
+  - expat==2.2.10=h9c3ff4c_0
+  - nbconvert-pandoc==7.4.0=pyhd8ed1ab_0
+  - notebook==6.3.0=py39hf3d152e_0
+  - attrs==23.1.0=pyh71513ae_1
+  - libpq==12.9=h16c4e8d_3
+  - intel-openmp==2021.4.0=h06a4308_3561
+  - ipywidgets==8.0.6=pyhd8ed1ab_0
+  - mistune==2.0.5=pyhd8ed1ab_0
+  - pip
+  - ipython==8.13.2=pyh41d4057_0
+  - jupyter==1.0.0=py39hf3d152e_8
+  - keyutils==1.6.1=h166bdaf_0
+  - numpy-base==1.23.5=py39h31eccc5_0
+  - backports.functools_lru_cache==1.6.4=pyhd8ed1ab_0
+  - ply==3.11=py_1
+  - defusedxml==0.7.1=pyhd8ed1ab_0
+  - sqlite==3.41.2=h5eee18b_0
+  - _openmp_mutex==5.1=1_gnu
+  - jupyter_console==6.4.3=pyhd3eb1b0_0
+  - libxcb==1.15=h7f8727e_0
+  - bleach==6.0.0=pyhd8ed1ab_0
+  - setuptools==66.0.0=py39h06a4308_0
+  - argon2-cffi==21.3.0=pyhd8ed1ab_0
+  - pyqt5-sip==12.11.0=py39h6a678d5_1
+  - zlib==1.2.13=h5eee18b_0
+  - mkl-service==2.4.0=py39h7f8727e_0
+  - typing_extensions==4.6.1=pyha770c72_0
+  - six==1.16.0=pyh6c4a22f_0
+  - git==2.34.1=pl5262hc120c5b_0
+  - matplotlib-inline==0.1.6=pyhd8ed1ab_0
+  - c-ares==1.18.1=h7f8727e_0
+  - nbclient==0.8.0=pyhd8ed1ab_0
+  - curl==7.87.0=h5eee18b_0
+  - freetype==2.10.4=h0708190_1
+  - libnghttp2==1.46.0=hce63b2e_0
+  - libstdcxx-ng==11.2.0=h1234567_1
+  - webencodings==0.5.1=py_1
+  - nbconvert==7.4.0=pyhd8ed1ab_0
+  - libssh2==1.10.0=h8f2d780_0
+  - zeromq==4.3.4=h9c3ff4c_1
+  - gstreamer==1.14.1=h5eee18b_1
+  - sip==6.6.2=py39h6a678d5_0
+  - ca-certificates
+  - lz4-c==1.9.3=h9c3ff4c_1
+  - perl==5.34.0=h5eee18b_2
+  - python-fastjsonschema==2.17.1=pyhd8ed1ab_0
+  - dbus==1.13.18=hb2f20db_0
+  - traitlets==5.9.0=pyhd8ed1ab_0
+  - importlib_resources==5.12.0=pyhd8ed1ab_0
+  - widgetsnbextension==4.0.7=pyhd8ed1ab_0
+  - jupyter_client==7.0.6=pyhd8ed1ab_0
+  - pyzmq==19.0.2=py39hb69f2a1_2
+  - libcurl==7.87.0=h91b91d3_0
+  - libllvm10==10.0.1=he513fc3_3
+  - tornado==6.1=py39hb9d737c_3
+  - icu==58.2=hf484d3e_1000
+  - gst-plugins-base==1.14.1=h6a678d5_1
+  - nbconvert-core==7.4.0=pyhd8ed1ab_0
+  - libpng==1.6.39=h5eee18b_0
+  - libxml2==2.9.14=h74e7548_0
+  - platformdirs==3.5.1=pyhd8ed1ab_0
+  - nspr==4.33=h295c915_0
+  - nbformat==5.8.0=pyhd8ed1ab_0
+  - wcwidth==0.2.6=pyhd8ed1ab_0
+  - backports==1.0=pyhd8ed1ab_3
+  - pexpect==4.8.0=pyh1a96a4e_2
+  - libev==4.33=h7f8727e_1
+  - packaging==23.1=pyhd8ed1ab_0
+  - entrypoints==0.4=pyhd8ed1ab_0
+  - pickleshare==0.7.5=py_1003
+  - jedi==0.18.2=pyhd8ed1ab_0
+  - pandoc==2.19.2=ha770c72_0
+  - pcre2==10.37=he7ceb23_1
+  - pure_eval==0.2.2=pyhd8ed1ab_0
+  - backcall==0.2.0=pyh9f0ad1d_0
+  - libgomp==11.2.0=h1234567_1
+  - cudatoolkit=11.8.0
+  - executing==1.2.0=pyhd8ed1ab_0
+  - jsonschema==4.17.3=pyhd8ed1ab_0
+  - libedit==3.1.20191231=he28a2e2_2
+  - prompt_toolkit==3.0.38=hd8ed1ab_0
+  - lerc==3.0=h295c915_0
+  - zipp==3.15.0=pyhd8ed1ab_0
+  - pcre==8.45=h9c3ff4c_0
+  - tzdata==2023c=h04d1e81_0
+  - pygments==2.15.1=pyhd8ed1ab_0
+  - bzip2==1.0.8=h7b6447c_0
+  - python==3.9.16=h7a1cb2a_2
+  - blas==1.0=mkl
+  - jupyterlab_pygments==0.2.2=pyhd8ed1ab_0
+  - mkl_random==1.2.2=py39h51133e4_0
+  - libwebp-base==1.2.4=h5eee18b_1
+  - nss==3.74=h0370c37_0
+  - libgcc-ng==11.2.0=h1234567_1
+  - decorator==5.1.1=pyhd8ed1ab_0
+  - qt-webengine==5.15.9=hd2b0992_4
+  - zstd==1.5.2=ha4553b6_0
+  - python_abi==3.9=2_cp39
+  - openssl
+  - ipykernel==5.5.5=py39hef51801_0
+  - krb5==1.19.3=h3790be6_0
+  - terminado==0.17.1=pyh41d4057_0
+  - giflib==5.2.1=h36c2ea0_2
+  - numpy==1.23.5=py39h14f4228_0
+  - pyqt==5.15.7=py39h6a678d5_1
+  - ipython_genutils==0.2.0=py_1
+  - ptyprocess==0.7.0=pyhd3deb0d_0
+  - beautifulsoup4==4.12.2=pyha770c72_0
+  - gdbm==1.18=hd4cb3f1_4
+  - pkgutil-resolve-name==1.3.10=pyhd8ed1ab_0
+  - parso==0.8.3=pyhd8ed1ab_0
+  - jupyterlab_widgets==3.0.7=pyhd8ed1ab_1
+  - soupsieve==2.3.2.post1=pyhd8ed1ab_0
+  - jpeg==9e=h166bdaf_1
+  - _libgcc_mutex==0.1=main
+  - libxslt==1.1.35=h4e12654_0
+  - stack_data==0.6.2=pyhd8ed1ab_0
+  - typing-extensions==4.6.1=hd8ed1ab_0
+  - qtconsole==5.4.3=pyhd8ed1ab_0
+  - argon2-cffi-bindings==21.2.0=py39hb9d737c_2